K. Kamino, N. Kadakia, K. Aoki, T.S. Shimizu, and T. Emonet" "Optimal inference of molecular interactions in live FRET imaging", biorXiv (2022). . Link

N. Kadakia, "Optimal control methods for nonlinear parameter estimation in biophysical neuron models", biorXiv (2022). Link

N. Kadakia, M. Demir, B. Michaelis, M. A. Reidenbach, D. A. Clark, and T. Emonet "Odor motion sensing enables complex plume navigation", biorXiv (2022). Link

V. Jayaram*, N. Kadakia*, and T. Emonet, "Sensing complementary temporal features of odor signals enhances navigation of diverse turbulent plumes", eLife 11, e72415 (2022). (*co-first author/equal contribution). Link

M. Demir*, N. Kadakia*, H. D. Anderson, D. A. Clark, and T. Emonet, "Walking Drosophila navigate complex plumes using stochastic decisions biased by the timing of odor encounters," eLife 9, e57524 (2020). (*co-first author/equal contribution). Link Preview by by Antonio Celani

N. Kadakia and T. Emonet, "Front-end Weber-Fechner gain control enhances the fidelity of combinatorial odor coding", eLife 8, e45293 (2019). Link

H. D. I. Abarbanel, S. Shirman, D. Breen, N. Kadakia, D. Rey, E. Armstrong, and D. Margoliash, "A unifying view of synchronization for data assimilation in complex nonlinear networks", Chaos 27, 126802 (2017). Link

N. Kadakia, The Dynamics of Nonlinear Inference. PhD Thesis 2017, UC San Diego Dept. of Physics.PDF

N. Kadakia, D. Rey, J. Ye, H. D. I. Abarbanel, "Symplectic structure of statistical variational data assimilation", Q. J. R. Meteorol. Soc. 143 756-771 (2017). Link

D. Breen, S. Shirman, E. Armstrong, N. Kadakia, H.D.I. Abarbanel, "HVCI Neuron properties from statistical data assimilation", arXiv:1608.04433 [q-bio.NC] (2016). PDF

N. Kadakia, "Hybrid Monte Carlo with chaotic mixing", arXiv:1604.07343 [physics.data-an] (2016). PDF

[PATENT] M. Huang, N. Kadakia. S. Naczas, H. Bakhru. Fabrication of surface textures by ion implantation for antireflection of silicon crystals. U.S. Patent # US 9231061 B2. (2016). Link

N. Kadakia, E. Armstrong, D. Breen, U. Morone, A. Daou, D. Margoliash, H. D. I. Abarbanel, "Nonlinear statistical data assimilation for HVCRA neurons in the avian song system", Biol. Cybern. 110(6), 417-434 (2016). preprint View online through Springer Sharing Initiative The final publication through Springer here

J. Ye, D. Rey, N. Kadakia, M. Eldridge, U. Morone, P. Rozdeba, H. D. I. Abarbanel, and J. C. Quinn, "Systematic variational method for statistical nonlinear state and parameter estimation", Phys. Rev. E 92(5), 052901 (2015). PDF

J. Ye, N. Kadakia, P. J. Rozdeba, H. D. I. Abarbanel, and J. C. Quinn, "Improved variational methods in statistical data assimilation", Nonlin. Proc. Geophys. 22 (2), 205-213 (2015). PDF

P. Akhter, M. Huang, W. Spratt, N. Kadakia, and F. Amir, "Tailoring the optical constants in single-crystal silicon with embedded silver nanostructures for advanced silicon photonics applications", J. Appl. Phys. 117, 123102 (2015). PDF

P. Akhter, M. Huang, N. Kadakia, W. Spratt, G. Malladi, and H. Bakhru, "Suppressing light reflection from polycrystalline silicon thin films through surface texturing and silver nanostructures", J. Appl. Phys. 116, 113503 (2015). PDF

N. Kadakia, "Nanoparticle scattering, absorption, and interface effects for surface plasmon enhanced thin silicon solar cells: Theory, past findings, and future directions", Handbook of Research on Solar Energy Systems and Technologies. Ed. Sohail Anwar, Hershey, PA: IGI Global (2012). Link

N. Kadakia, M. Huang, and H. Bakhru, "Embedded silver nanoparticle fabrication for surface plasmon-enhanced silicon photovoltaics", SPIE Conf. Proc., 8111 (2011), DOI: 10.1117/12.891638. PDF

N. Kadakia, M. Huang and H. Bakhru, "Fabrication of subsurface metallic nanoparticles for enhanced carrier generation in silicon-based photovoltaics", MRS Conf. Proc., 1322, mrss11-1322-b06-07 (2011), DOI:10.1557/opl.2011.1104. PDF

N. Kadakia, S. Naczas, H. Bakhru, and M. Huang, "Fabrication of surface textures by ion implantation for antireflection of silicon crystals", Appl. Phys. Lett. 97, 191912 (2010). PDF

Nirag Kadakia
Email: nirag.kadakia@yale.edu

Yale, Dept of MCDB

New Haven, CT 06511